From TCGA Data to Gene Networks

To facilitate a smoother pipeline to study gene networks from cancer genomics data, TCGA2STAT package is used to provide TCGA data in a format ready for analysis via XMRF. Users only need to specify the type of cancer and data platform and the function will query the data from the Broad GDAC Firehose project and process the data into a gene-by-sample matrix format for further analysis.



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2015-05-29